Web-based platform
G-OnRamp provides an integrated, web-based, graphical interface for performing large scale bioinformatics analyses.
Designed for any genome
G-OnRamp is designed to work with any eukaryotic genomes.
Reproducible workflow
G-OnRamp record all the steps in the analysis workflow (e.g., tool parameters, data conversions) so that you can apply the same workflow to other eukaryotic genomes.
Share your results
The G-OnRamp analysis history (datasets, tools, and parameter settings) can be shared publicly or only with your colleagues.
Customizable
You can incorporate additional Galaxy tools and modify the G-OnRamp workflow (e.g., tool parameters) according to your needs.
Multiple deployment options
G-OnRamp analysis can be done on the cloud (e.g., Amazon EC2) or on the a local virtual machine (e.g., VirtualBox) instance

GEP + Galaxy = G-OnRamp

The G-OnRamp project combines two successful and long-running projects—the Genomics Education Partnership (GEP) and the Galaxy Project. It aims to create an integrated, web-based, and scalable environment that enables biologists to utilize large genomic datasets for the interactive annotation of any eukaryotic genome.

From genome data to genome browser

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G-OnRamp tools

Sequence similarity
  • NCBI BLAST+
  • UCSC BLAT

 

RNA-seq
  • HISAT
  • StringTie
  • regtools
Gene predictions
  • Augustus
  • GlimmerHMM
  • SNAP
Tandem repeats
  • Tandem Repeats Finder
Create Genome Browser Assembly Hubs
  • Hub Archive Creator
  • JBrowse Archive Creator

G-OnRamp beta testers workshop

(July 2017, June 2017, and July 2016)

  • 33 participants from 26 institutions
  • 15 genome assemblies
  • Assembly sizes: 70Mb - 2.8Gb
  • Number of scaffolds: 54 - 402,501
  • 12 genomes with RNA-seq data

Welcome to G-OnRamp Workshops

The G-OnRamp beta testers workshop is designed to provide information on recent developments and future plans for G-OnRamp project, including:

  • Technical presentations
  • Hand-on practice on creating Genome Browsers with G-OnRamp
  • Chance to explore the Genome Browsers for whole genome assemblies created by G-OnRamp
  • Discussion on using G-OnRamp and Galaxy in research and education
  • Multiple working groups sections    

Read more

           

Sign up for the Summer 2018 G-OnRamp Workshop Mailing List

Thanks for your interest in G-OnRamp! We will host two G-OnRamp workshops in June and July 2018. Please use the sign-up form to indicate interest, and we will contact you when dates and places are set up.

Sign up